As a researcher, I’m constantly coming across new ideas, techniques, cool findings, and the like. A common example is listening to a talk and making notes on the speaker’s remarks. As an aside, I’ve always wondered what is done with these notes. Often I’ve written numerous comments on things someone has said, but I nearly never find myself returning to those notes. I’m not sure if this means I’m a poor researcher, or if the entire exercise is pointless (although perhaps the act of writing things down helps with memory storage).

At any rate, there are notes I do return to, brainstorming exercises, drafts of research strategies, lists, and so on, none of which I feel is particularly worth sharing online (top-secret plans to rule the world!).

I had at one time a large notebook containing my notes and doodles, but these I find nearly impossible to search unless one is very disciplined about titles and dates. And for me, I rarely need the free-form capability of paper (although it is freeing).

My tool of choice so far has been TiddlyWiki, a personal wiki that does a good job ‘getting out of the way’ and letting my brilliance shine through (right). It has simple formatting rules, hyperlinks, etc., and I’ve used it extensively to date. A few things bother me about it, though. One is that the formatting language is so peculiar… it is similar to Textile, but different enough from my other two wikis — Mediawiki and Trac — that I constantly confuse how to make links. I would like an editor that is more WYSIWYG. Tiddlywiki is cross-platform, but since it is just a file, I still need to use Subversion to manage the file.

The Tomboy application on Gnome is a note-taking app that is WYSIWYG, and has hyperlink capability. It also exports to HTML if you need this. I’m just exploring it for my purposes. Since I use Ubuntu exclusively at work and home, the file format isn’t so crucial anymore. It has better list formatting, a crude hierarchy using notebooks, but no tagging, which is a pain. The big hurdle for me was getting my old notes (there are hundreds) into its format. Sadly, while there is a nice Gnome API, the programming task exceeded my interests. Tomboy also is more challenging to sync than just using Subversion (which I appreciate not everyone uses — why not!).

Another tool I’ve looked at is Google Notebook, but this one requires web access, which isn’t always guaranteed (just today my work connection went down, and after a few hours of fiddling, it turned out someone kicked out a cable in the server room - which affected only me). I think I’m just getting a little tired of Google products. More importantly, it’s not as simple to create wiki links, which I kinda like for the ability to let the brain flow.

At times I’ve used concept maps to graphically explore topics, which is great, but I’ve found I never return to these maps — they get outdated quickly. Similar to concept maps are mindmaps, which are a form of tool-supported brainstorming, but again, while neat for a few tries, doesn’t seem to scale well. I hated the idea that everything has to link to everything else. Is my brain too non-linear for mindmapping? That’s a scary thought.

In the end, I’ve stuck with Tiddlywiki, even though the interface isn’t super-slick. It’s got my stuff in its own format, so migration somewhere else will be a pain. That said, I’m planning to buy a Mac at some point, so there might be some slick Mac tools that I’m unfamiliar with … any ideas?

It occurs to me that I’m much more tied to Firefox than I am to my operating system .. these I change regularly, but I’ve been using Firefox since it was Phoenix and Mozilla.

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4 Responses to “Research note-keeping”
  1. Great post! Another web app you didn’t mention is Springnote (www.springnote.com). It has a ton of features great for note taking and collaborative tasks. You can quickly get on Springnote, edit notes, and then log off. It’s that easy.

  2. Nice post!

    Tomboy *does* support tagging at the API level, and in fact Notebooks are just a special kind of tag. We found that for our users, notebooks were a more useful concept, especially considering how fast and easy note search is.

    That being said, plenty of people want a regular tagging UI, so don’t be surprised if an add-in shows up one of these days. We experimented a lot with it before deciding on Notebooks, so there’s even old code floating around in SVN for interested parties.

    You may also be interested in using Conduit to sync your Tomboy notes. Though I haven’t used it myself it seems to be a popular approach if you can’t set up your own ssh or webdav server.

    All that being said, TiddlyWiki is a great tool and I’m glad you’ve found something that works for you!

  3. I have a site giving a database of information management tools with thumbnail samples. It includes mind-mappers, concept mapping software, outliners and a number of other graphical tools. You can select to see just those for a specific OS, so you could choose just Mac to see those.

    If you use one of the browser-based ones, you’ll be pretty well cross platform whatever machine you want to use. Bubbl.us sounds as if it might be for you - it allows disconnected sections, a web, or hierarchical structure - depends how you feel. Not sure if it allows long enough notes for you though.

    An academic-slanted one is Sematik. This has a mind-mapping base but is aimed at producing finished documents, which may solve your ‘never find myself returning to those notes’ problem.

    Vic
    http://www.mind-mapping.org
    The master list of mind mapping &
    information management software

  4. I join my soul cry to this post!

    I have searched for a couple of years for personal organizer/note clipper instrument.
    Although I had tried TW for a year ago I hoped to find something more semantics aware, more tunable and may be more intellectual (auto syncronizing, everything compatible etc.)

    Just every described step was done! Instead Tomboy I tryed WikidPad

    At the end I found MGTD, based on TW, and though those organizing conception is not very suitable for me, the tagging scheme and compatibility of TW have led to the decision.

    I am a researcher too. So my specific needs in organizing everyday operations I hope to do step by step with JavaScript plugins which are easy for TW.

    About its not-standard wiki format: There is a standard plugin for RSS-export. It can be tuned so every edit will generate RSS feed prepared for publishing or importing into everything.

    Good luck!

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